PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00142985001
Common NameGSBRNA2T00142985001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 360aa    MW: 39586 Da    PI: 6.3396
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00142985001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.62.5e-084686439
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.....Htv 39
                          +C++++ ++++  C+d ++ lC++C   +H+g     H+ 
  GSBRNA2T00142985001 46 LICERCNAQPASVRCTDERVSLCQNCDWLGHNGatnshHKK 86
                         68*****************************9899997765 PP

2CCT56.59.9e-20302345144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R++a+ RYkeK+k RkF+K++rY sRK++A+ R RvKGrFvk+ 
  GSBRNA2T00142985001 302 RNNAVIRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSG 345
                          999**************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501198.887147IPR000315B-box-type zinc finger
CDDcd000211.42E-6447No hitNo description
SMARTSM003364.4E-7447IPR000315B-box-type zinc finger
PROSITE profilePS501199.34389IPR000315B-box-type zinc finger
PfamPF006433.0E-54686IPR000315B-box-type zinc finger
CDDcd000213.27E-54776No hitNo description
SMARTSM003363.54888IPR000315B-box-type zinc finger
PROSITE profilePS5101714.951302344IPR010402CCT domain
PfamPF062039.8E-15302344IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGYMCDFCGE QRSMVHCRSD AACLCLSCDR NVHSANALSK RHSRTLICER CNAQPASVRC  60
TDERVSLCQN CDWLGHNGAT NSHHKKQTIN CYSGCPSSEE LASIWSFCLD LDLDFSKGGQ  120
SACEQGMGLM TIDEGTGEKR SGGHDANVDQ PGTSSAAQEK STLAKGLGVS EDDFCGNLIM  180
DEMDLAFEKY DELFGTAYNS SKDLFEHGGI ESLFEKHEGK TMQQPAESNA ASGDSFMTCR  240
TEPIICFTSQ PAHSNISFSG ATGEGNNAGD FQDCGVSSMQ QLSKETPLWC PPTAQEISAT  300
TRNNAVIRYK EKKKARKFDK RVRYVSRKER ADVRRRVKGR FVKSGEAYDY DPLSPTRSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00142985001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013598992.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10
SwissprotQ9LUA90.0COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A078D7P00.0A0A078D7P0_BRANA; BnaC07g26320D protein
TrEMBLA0A0D3DBR00.0A0A0D3DBR0_BRAOL; Uncharacterized protein
STRINGBra037499.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]